![]() ![]() ![]() ![]() for "Compare Contigs)" to the toolbar in the project window: Note that the previous option "Merge existing contigs" has been replaced by the "Assembly with Preprocessing" option (if you do not need pre-processing, the simple "Assemble" option will also merge existing contigs). ![]() Use the specific menu item in the "Advanced Assembly" submenu in the "Contig" menu. Similarly, "Compare contigs" and "Assemble in groups" now have separate toolbar icons you may need to change the "Toolbars" preferences to see the new icons. The "Contig" menu has been re-organized so that each of the advanced assembly options now has a separate menu item. In older CodonCode Aligner version, several "advanced" assembly options were accessible through a single menu item and toolbar button (including "Compare contigs" and "Assemble in groups (by name)".Īll of these functions are still available in CodonCode Aligner version 3. Several users have complained that advanced assembly or alignment options are not available anymore after upgrading to CodonCode Aligner version 3. Problem: Advanced assembly options are missing after upgrading to CodonCode Aligner version 3 This page describes known problems with the current release of CodonCode Aligner, ![]()
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